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Xu, X., Yu, Y., Zheng, T., Clark, F., Ross, J., Tavares, A.L.P., Wei, S.*, and Sun, J.* Beyond the axoneme: whole-cell proteomics identifies novel regulators of ciliogenesis in Xenopus epidermal multiciliated cells. bioRxiv. Under revision in J. Cell Biol. * Co-senior authors.
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Shi, Y.†, Huang, D.†, Song, C.†, Cao, R., Wang, Z., Wang, D., Zhao, L., Xu, X., Lu, C., Xiong, F., Zhao, H., Li, S., Zhou, Q., Luo, S., Hu, D., Zhang, Y., Wang, C., Shen, Y., Su, W., Wu, Y., Schmitz, K., Wei, S.* and Song, W.* (2024) Diphthamide-deficient eEF2 acts as a transcriptional co-activator for p53 to induce p21 expression and neural crest defects. Nat. Commun. 15, 3301. PMCID: 11053169. † Equal contributors. * Co-senior authors.
Chandrasekera, P.†, Perfetto, M.†, Lu, C.†, Zhuo M., Bahudhanapati, H., Li, J., Chen, W.C., Kulkarni, P., Christian, L., Liu, J., Yien, Y.Y., Yu, C., and Wei, S. (2022) Metalloprotease ADAM9 cleaves ephrin-B ligands and differentially regulates Wnt and mTOR signaling downstream of Akt kinase in colorectal cancer cells. J. Biol. Chem. 298, 102225.PMCID: 9358476. † Equal contributors.
Wang, J., Lu, C., and Wei, S. (2022) Whole-genome sequencing identifies I-SceI-mediated transgene integration sites in Xenopus tropicalis snai2:eGFP line. G3: Genes, Genomes, Genetics 12, jkac037. PMCID: 9073676.
Perfetto, M., Xu, X., Lu, C., Shi, Y., Yousaf, N., Li, J., Yien, Y.Y., and Wei, S. (2021) The RNA helicase DDX3 induces neural crest by promoting AKT activity. Development 148, 184341. PMCID: 7847268.
Halakos, E.G., Connell, A., Glazewski, L., Wei, S.*, and Mason, R.W.* (2021) Bottom up proteomics identifies neuronal differentiation pathway networks activated by cathepsin inhibition treatment in neuroblastoma cells that are enhanced by concurrent 13-cis retinoic acid treatment. J. Proteomics. 232, 104068. PMCID: 7814974. * Co-senior authors.
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Pei, S., Parthasarathy, S., Parajuli, A., Martinez, J., Lv, M., Jiang, S., Wu, D., Wei, S., Lu, X.L., Farach-Carson, M.C., Kirn-Safran, C.B., and Wang, L. (2020) Perlecan/Hspg2 deficiency impairs bone’s intracellular calcium signaling pathway and associated transcriptome in response to mechanical loading. Bone 131, 115078. PMCID: 6945981.
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Li, J.†, Perfetto, M.†, Materna, C., Li, R., Tran, H.T., Vleminckx, K., Duncan, M.K., and Wei, S. (2019) A new transgenic reporter line reveals Wnt-dependent Snail2 re-expression and cranial neural crest differentiation in Xenopus. Sci. Rep. 9, 11191. PMCID: 6672020. † Equal contributors.
Li, J.†, Perfetto, M.†, Neuner, R., Bahudhanapati, H., Christian, L., Mathavan, K., Bridges, L.C., Alfandari, D., and Wei, S.(2018) Xenopus ADAM19 regulates Wnt signaling and neural crest specification by stabilizing ADAM13. Development 145, 158154. PMCID: 5963864. † Equal contributors.
Wang, J., Koganti, P., Yao, J., Wei, S., and Cleveland, B. (2017) Comprehensive analysis of lncRNAs and mRNAs in skeletal muscle of rainbow trout (Oncorhynchus mykiss) exposed to estradiol. Sci. Rep. 7, 11780. PMCID: 5603547.
Li, J., Qu, J., Shi, Y., Perfetto, M., Ping, Z., Christian, L., Niu, H., Mei, S., Zhang, Q, Yang, X. and Wei, S. (2017) Nicotinic acid inhibits glioma invasion by facilitating Snail1 degradation. Sci. Rep. 7, 43173. PMCID: 5335718.
Fu, L., Zhang, M., Mastrantoni, K., Perfetto, M., Wei, S. and Yao, J. (2016) Bovine Lhx8, a germ cell-specific nuclear factor, interacts with Figla. PLOS One 11, e0164671. PMCID: 5055334.
Bahudhanapati, H., Bhattacharya, S., and Wei, S. (2015) Evolution of vertebrate Adam genes; duplication of testicular Adams from ancient Adam9/9-like loci. PLOS One 10, e0136281. PMCID: 4550289.
Christian, L., Bahudhanapati, H., and Wei, S. (2013) Extracellular metalloproteinases in neural crest development and craniofacial morphogenesis. Crit. Rev. Biochem. Mol. Biol. 48, 544-560. Review. PMID: 24066766.
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Wu, Y., Wei, S., Van Doren, S.R., and Brew, K. (2011) Entropy increases from different sources support the high-affinity binding of the N-terminal inhibitory domains of tissue inhibitors of metalloproteinases (N-TIMPs) to the catalytic domains of matrix metalloproteinases (MMPs) -1 and-3
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Wei, S., Xu, G., Bridges, L.C., Williams, P., White, J.M., and DeSimone, D.W. (2010) ADAM13 induces cranial neural crest by cleaving class B ephrins and regulating Wnt signaling. Dev. Cell 19: 345-352. PMCID: 2951023.
Van Doren, S.R., Wei, S., Gao, G., Dague, B.B., Palmier, M.O., Bahudhanapati, H., and Brew, K. (2008) Inactivation of N-TIMP-1 by N-terminal acetylation when expressed in Bacteria. Biopolymers 89: 960-968. PMCID: 2804306.
Hamze, A.B.†, Wei, S.†, Bahudhanapati, H., Kota, S., Acharya, K.R., and Brew, K. (2007) Constraining specificity in the N-domain of tissue inhibitor of metalloproteinases-1; gelatinase-selective inhibitors. Protein Sci. 16: 1905-1913. PMCID: 2206984. † Equal contributors.
Lauer-Fields, J.L., Cudic, M., Wei, S., Mari, F., Fields, G.B., and Brew, K. (2007) Engineered sarafotoxins as TIMP-like MMP inhibitors. J. Biol. Chem. 282: 26948-26955. PMID: 17626018.
Iyer, S., Wei, S., Brew, K., and Acharya, K.R. (2007) Crystal structure of the catalytic domain of matrix metalloproteinase-1 in complex with the inhibitory domain of tissue inhibitor of metalloproteinase-1. J. Biol. Chem. 282: 364-371. PMID: 17050530.
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Cui, T., Wei, S., Brew, K., and Leng, F. (2005) Energetics of binding the mammalian high mobility group protein HMGA2 to poly(dA-dT)2 and poly(dA)poly(dT). J. Mol. Biol. 352: 629-645. PMID: 16109425.
Wei, S., Xie, Z., Filenova, E., and Brew, K. (2003) Drosophila TIMP is a potent inhibitor of MMPs and TACE: similarities in structure and function to TIMP-3. Biochemistry 42: 12200-12207. PMID: 14567681.
Wei, S., Chen, Y., Chung, L., Nagase, H., and Brew, K. (2003) Protein engineering of the tissue inhibitor of metalloproteinase 1 (TIMP-1) inhibitory domain. In search of selective matrix metalloproteinase inhibitors. J. Biol. Chem. 278: 9831-9834. PMID: 12515831.