Johnson, Alexa C.B.; Biddle, Amy S. 2021. “The Use of Molecular Profiling to Track Equine Reinfection Rates of Cyathostomin Species Following Anthelmintic Administration” Animals 11, no. 5: 1345.

Johnson, Alexa C.B., and Amy S. Biddle 2021. “A Standard Scale to Measure Equine Keeper Status and the Effect of Metabolic Tendency on Gut Microbiome Structure” Animals 11, no. 7: 1975.

Cianci, J., Boyle, A., Stefanovski D., Biddle, A.S. 2021. Lack of Association Between Barometric Pressure and Incidence of Colic in Equine Academic Ambulatory Practice.  Journal of Equine Veterinary Science 97 (2021) 103342

Tavenner, M., McDonnell, S., Biddle, A.S. 2020. Development of the Equine Hindgut Microbiome in Semi-feral and Domestic Conventionally-Managed Foals. Animal Microbiome.

da Silva ÉB, Savage RM, Biddle AS, Polukis SA, Smith ML, Kung L. 2020. Effects of a chemical additive on the fermentation, microbial communities, and aerobic stability of corn silage with or without air stress during storage. J Anim Sci.Aug 1;98(8):skaa246.

Blair, J and Biddle, A.S. 2020. Stimulating Duddingtonia flagrans chlamydospore production through dehydration. Parasitology Research. 119:123-128.

Biddle, A.S., Tomb, J.-F., Fan, Z. 2018. Microbiome and Blood Analyte Differences Point to Community and Metabolic Signatures in Lean and Obese Horses. Frontiers in Veterinary Science. 5:225.

Janabi, A. D., Biddle, A. S., McKeever, K. 2017. The Effects of Acute Strenuous Exercise on the Fecal Microbiota in Standardbred Racehorses. Comparative Exercise Physiology, 13(1), 13–24.

Janabi AHD, Biddle AS, Klein D, McKeever KH. 2017. Exercise training-induced changes in the gut microbiota of Standardbred racehorses. Comparative Exercise Physiology. 12(3): 119-130.

Janabi AH, Kerkhof LJ, McGuinness LR, Biddle AS, McKeever KH. 2017. Comparison of a modified phenol/chloroform and commercial-kit method for extracting DNA from horse fecal material. Journal of Microbiological Methods. 129: 14-19.

Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, SchnellDJ, Church GM, Leschine SB, Blanchard JL. 2015. Genome and transcriptome of Clostridium phytofermentans, catalyst for the direct conversion of plant feedstocks to fuels. PLoS ONE. 10(6): e0118285. https://doi: 10.1371/journal.pone.0118285.

Biddle AS, Leschine S, Huntemann M, Han J, Chen A, Krypides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Schaumberg A, Pati A, Stamatis D, Reddy T, Lobos E, Goodwin L, Nordberg HP, Cantor MN, Hua SX, Woyke T, Blanchard JL. 2013. The complete genome sequence of Clostridium indolis DSM 755. Standards in Genomic Sciences. 9(3). https://doi:10.4056/sigs.5281010.

Biddle AS, Black SJ, Blanchard JL. 2013. An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction. PLoS ONE. 8(10): e77599. https://doi:10.1371/journal.pone.0077599.

Biddle AS, Stewart L, Blanchard JL, Leschine S. 2013. Untangling the Genetic Basis of Fibrolytic Specialization  by Lachnospiraceae and Ruminococcaceae in  Diverse Gut Communities. Diversity. 5(3), 627-640; https://doi:10.3390/d5030627.

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